PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_35331.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9262.62 Da    PI: 8.7544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_35331.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-122266346
                             --SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF  3 ienksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46
                             ++n+++ + +f   R ++ilKKA EL vLCd +++v+ +  +g+l
  Rsa1.0_35331.1_g00001.1 22 VKNQTRFKESFlLAREKTILKKALELTVLCDNKICVLHYDREGNL 66
                             57777777776358*************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.5311373IPR002100Transcription factor, MADS-box
SMARTSM004320.00521372IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-111677IPR002100Transcription factor, MADS-box
PfamPF003198.3E-73667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MVSFSSSPSD SSTKTKKNKL SVKNQTRFKE SFLLAREKTI LKKALELTVL CDNKICVLHY  60
DREGNLVSTL PEDQSQVTDI LD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_35331.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476973.12e-50PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N22e-15AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YBW83e-31A0A3P5YBW8_BRACM; Uncharacterized protein
STRINGBra020923.1-P2e-31(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.12e-16AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]