PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G27090.1 | ||||||||
Common Name | AGL54, F15P11.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21737.8 Da PI: 9.2242 | ||||||||
Description | AGAMOUS-like 54 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62 | 6.7e-20 | 27 | 75 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +gkl ++++ AT5G27090.1 27 SSSNAKKTTNLSMREQTMFKKALELSTLCDIEVCVIYYGRDGKLiKTWP 75 6788899999*********************************856886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-12 | 6 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.75E-23 | 20 | 102 | No hit | No description |
PROSITE profile | PS50066 | 10.905 | 29 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-13 | 29 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-15 | 29 | 110 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020093 | anatomy | antipodal cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC 60 VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR TNLSLFLRKQ ILHDKKLSEK 120 VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT 180 EPLSNTE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 246851_at | 2e-58 | ||||
Expression Atlas | AT5G27090 | - | ||||
AtGenExpress | AT5G27090 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G27090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G49490 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G27090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141218 | 0.0 | AY141218.1 Arabidopsis thaliana MADS-box protein AGL54 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F15P11 | 0.0 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198061.2 | 1e-135 | AGAMOUS-like 54 | ||||
Swissprot | Q7X9N2 | 1e-103 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | Q9S9U2 | 1e-134 | Q9S9U2_ARATH; AGAMOUS-like 54 | ||||
STRING | AT5G27090.1 | 1e-135 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 | Representative plant | OGRP6766 | 2 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT5G27090.1 |
Entrez Gene | 832767 |
iHOP | AT5G27090 |
wikigenes | AT5G27090 |