PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_30641.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 232aa MW: 25185.1 Da PI: 4.6741 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 186.5 | 1.8e-57 | 39 | 232 | 3 | 200 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +++ +c ++s+ e a ++L r++e +s++gdpm+R+ +yf eAL++rl+ ++++ +++++++++ ++++k++++++ Rsa1.0_30641.1_g00001.1 39 KAIHDCSLILDSEPPEDAAKALVRIRESVSEHGDPMERVGFYFSEALRSRLSP------DSVSNDSSRSSTVENLVMSYKTLNDAC 118 567788899999999**************************************......788888888889*************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171 P++kf+hltaNqaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+ g + +l +tg+rL +fA+ Rsa1.0_30641.1_g00001.1 119 PYFKFAHLTANQAILEATEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaRVRISGIPAPSLGesPEPSLIATGNRLGDFAKV 204 ************************************************77666**********99998999*************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgE 200 l+++fef v + +++l+ +++rv+p+E Rsa1.0_30641.1_g00001.1 205 LDLDFEFVS-VLTPIHSLDGSSFRVDPDE 232 *********.799*************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.362 | 11 | 232 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-55 | 39 | 232 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
PPLPSSSPPR QKTKHPEPND SEENGGGSQD FDLEPPLLKA IHDCSLILDS EPPEDAAKAL 60 VRIRESVSEH GDPMERVGFY FSEALRSRLS PDSVSNDSSR SSTVENLVMS YKTLNDACPY 120 FKFAHLTANQ AILEATEHSS KIHIVDFGIV QGIQWPALLQ ALATRSSGKP ARVRISGIPA 180 PSLGESPEPS LIATGNRLGD FAKVLDLDFE FVSVLTPIHS LDGSSFRVDP DE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-69 | 36 | 232 | 3 | 201 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_30641.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441267.1 | 1e-150 | PREDICTED: scarecrow-like protein 4 | ||||
Swissprot | Q9FL03 | 1e-102 | SCL4_ARATH; Scarecrow-like protein 4 | ||||
TrEMBL | A0A0D3D8D5 | 1e-126 | A0A0D3D8D5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g064520.1 | 1e-127 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4786 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-102 | GRAS family protein |
Publications ? help Back to Top | |||
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