PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_30618.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 157aa MW: 18421.2 Da PI: 10.3202

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_30618.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.5e-26	46	96	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl Rsa1.0_30618.1_g00001.1 46 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 96 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	32	118	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-22	49	96	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MLTQEPYFSS DSSSPLAIQN NHCPGTNERG EKKTPKNRNT RIKRRQDKLE LSEIRKYFDR 60 PIMKAAKELN VGLTVLKKRC RELEIYRWPH RKLKSLNSLI YNLKGVGMDE EVKNLEEHRV 120 LIEQEPDAEL TDGTKKLRQA CFKAKYKRKK SLANDGY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_30618.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455880.1	1e-112	PREDICTED: protein RKD4
Swissprot	Q9LVU8	1e-70	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078G3S3	1e-101	A0A078G3S3_BRANA; BnaC09g29080D protein
TrEMBL	A0A078IEW6	1e-101	A0A078IEW6_BRANA; BnaA10g06400D protein
TrEMBL	A0A397XRA8	1e-101	A0A397XRA8_BRACM; Uncharacterized protein
TrEMBL	M4CFV6	1e-101	M4CFV6_BRARP; Uncharacterized protein
STRING	Bra003088.1-P	1e-102	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-73	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]