PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_26460.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 141aa    MW: 15663 Da    PI: 11.3819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_26460.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-186195135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Rsa1.0_26460.1_g00001.1 61 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 95
                             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-1554117No hitNo description
SMARTSM004011.1E-1555105IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.3855591IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-145993IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.36E-1260107No hitNo description
PROSITE patternPS0034406186IPR000679Zinc finger, GATA-type
PfamPF003202.7E-166195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTVRPEMSFT GKPRSRRSRA LVPSVAGTWA PTPEAELCRS VAKRKPTKKL EAAEGGGARR  60
CTHCASEKTP QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVST QHSNSHRKVM  120
ELRRQKEQLE SAVHLLPFQP Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_26460.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531961e-110AK353196.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444168.11e-100PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-78GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A397YRL42e-91A0A397YRL4_BRACM; GATA transcription factor
TrEMBLM4CGT62e-91M4CGT6_BRARP; GATA transcription factor
STRINGBra003419.1-P3e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-81GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]