PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_24891.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 105aa    MW: 12015.6 Da    PI: 10.2626
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_24891.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-20970157
                             TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++ R+++t eq++ L +lF+   r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Rsa1.0_24891.1_g00001.1  9 KCGRWNPTGEQVKLLTDLFNAgLRTPSTDQIQKISTELsvygKIESKNVFYWFQNHKARERQ 70
                             568*****************99**************************************97 PP
2Wus_type_Homeobox113.11.5e-36972265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             ++ RW+Pt eQ+k+L++l+++GlrtP++++iq+i++eL+ yGkie+kNVfyWFQN+kaRerqk+
  Rsa1.0_24891.1_g00001.1  9 KCGRWNPTGEQVKLLTDLFNAGLRTPSTDQIQKISTELSVYGKIESKNVFYWFQNHKARERQKR 72
                             678***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.544671IPR001356Homeobox domain
SMARTSM003894.5E-4875IPR001356Homeobox domain
PfamPF000461.9E-171070IPR001356Homeobox domain
SuperFamilySSF466893.85E-121174IPR009057Homeodomain-like
CDDcd000863.11E-41272No hitNo description
Gene3DG3DSA:1.10.10.602.5E-81270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MGGGGTGTKC GRWNPTGEQV KLLTDLFNAG LRTPSTDQIQ KISTELSVYG KIESKNVFYW  60
FQNHKARERQ KRRKISTVDF DHCQETNLSL PHRDKPCHYR PPPKG
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor that plays a central role during developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_24891.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892011e-121AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469689.19e-75PREDICTED: WUSCHEL-related homeobox 7-like
SwissprotQ9FFK02e-50WOX7_ARATH; WUSCHEL-related homeobox 7
TrEMBLA0A078FP514e-57A0A078FP51_BRANA; BnaC02g02200D protein
TrEMBLA0A0D3AHX14e-57A0A0D3AHX1_BRAOL; Uncharacterized protein
STRINGBo2g007050.17e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40142857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05770.11e-52WUSCHEL related homeobox 7
Publications ? help Back to Top
  1. Conte MG,Gaillard S,Droc G,Perin C
    Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
    BMC Genomics, 2008. 9: p. 183
    [PMID:18426584]
  2. Kong D,Hao Y,Cui H
    The WUSCHEL Related Homeobox Protein WOX7 Regulates the Sugar Response of Lateral Root Development in Arabidopsis thaliana.
    Mol Plant, 2016. 9(2): p. 261-270
    [PMID:26621542]
  3. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]