PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_23673.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 124aa MW: 13946.3 Da PI: 10.5864 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 6e-14 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r++ + kR++g+lKKA E+ +LC+ ++ ii+s+ Rsa1.0_23673.1_g00001.1 10 FIVNNSLRKTAYKKRKKGLLKKAPEIFTLCGNNAGAIIYSP 50 799************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-17 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.241 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-11 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MTRRKVKHAF IVNNSLRKTA YKKRKKGLLK KAPEIFTLCG NNAGAIIYSP YDPTPEVWPS 60 VEGMNQAMEM SRSVDQNTFI RIKPKPVQDT MQVKAKVSPT LDDKVHESST TCILHLSLSK 120 SVIS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RRKVKHAFIVNNSLRKTAYKKRK |
2 | 15 | 24 | LRKTAYKKRK |
3 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of gametophytes and seeds. {ECO:0000269|PubMed:12815071}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_23673.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by MEA, FIS2 and FIE in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB608492 | 2e-73 | AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458729.1 | 9e-33 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | O80805 | 8e-19 | PHE1_ARATH; MADS-box transcription factor PHERES 1 | ||||
TrEMBL | U5GF69 | 3e-22 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s00420.1 | 2e-24 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-15 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
---|---|---|---|
|