PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_17339.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 17995.9 Da PI: 7.07 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.3 | 3e-15 | 3 | 53 | 50 | 100 |
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el ++++e Rsa1.0_17339.1_g00001.1 3 GESQRGDAANSLVYEANLRLRDPIYGCMGAISTLQHHIQSLQSELTTVRTE 53 5789******************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.478 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-14 | 2 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
EVGESQRGDA ANSLVYEANL RLRDPIYGCM GAISTLQHHI QSLQSELTTV RTEILRHKYR 60 EAATITSLQQ NNNNFNNNTT SVSDHAALAA SILLPPPPPP PPPPRPPRLL SSRPAAPPTP 120 PASLPSPSMV VSSSSSNSSA TNSIYNPPPS SAAGYSNSLS SDNNVHYFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-15 | 6 | 65 | 63 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-15 | 6 | 65 | 63 | 122 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_17339.1_g00001.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433132.1 | 9e-74 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13 | ||||
Swissprot | Q9AT61 | 6e-57 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A397ZM35 | 7e-64 | A0A397ZM35_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A397ZNW5 | 8e-64 | A0A397ZNW5_BRACM; Uncharacterized protein | ||||
STRING | Bo4g059520.1 | 1e-61 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-41 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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