PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17254.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 226aa    MW: 24650.2 Da    PI: 7.141
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17254.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18166200135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Rsa1.0_17254.1_g00001.1 166 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 200
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-792226IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-15160210IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.187164196IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-14164224No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13164198IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-14165212No hitNo description
PfamPF003202.4E-16166200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDVYGLSSPD ILRVDDLLDF SNEDIYSASS STSTAATSSS SFPPQNPNYH HHLPSSADHS  60
FLHDICVPSD DAAHLEWLSQ FVDDSFVDFP SNPLGGTMTS FKTETSKPRS KRSKPPSTLV  120
GTWAPMSEPD QNIHDPGRSK PKKEHSGGGG RHQSSAETAE GGLRRCTHCA SDKTPQWRTG  180
PLGPKTLCNA CGVRFKSGRL VPEYRPASSP TFVLTQHSNS HRKVME
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17254.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691183.11e-135GATA transcription factor 2-like isoform X1
SwissprotO497411e-106GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A3P6CRW61e-132A0A3P6CRW6_BRAOL; Uncharacterized protein
STRINGBo4g195320.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.19e-99GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]