PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_16105.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 84aa    MW: 9348.83 Da    PI: 11.0271
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_16105.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.4e-303584251
                  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                             prl+Wtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ
  Rsa1.0_16105.1_g00001.1 35 PRLKWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQ 84
                             8************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-263184IPR009057Homeodomain-like
PROSITE profilePS5129413.9693184IPR017930Myb domain
TIGRFAMsTIGR015571.1E-213584IPR006447Myb domain, plants
SuperFamilySSF466892.87E-133584IPR009057Homeodomain-like
PfamPF002493.2E-83684IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MGKRGGKNSN ENYNGVGFKD HGGSGVRPYV RSHVPRLKWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-193684452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_16105.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114210.19e-49PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
RefseqXP_013610062.18e-49PREDICTED: putative Myb family transcription factor At1g14600
RefseqXP_013714142.17e-49putative Myb family transcription factor At1g14600
SwissprotQ700D97e-31MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078FYM82e-47A0A078FYM8_BRANA; BnaC09g20940D protein
TrEMBLA0A0D3E7I72e-47A0A0D3E7I7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DSK92e-47A0A3P6DSK9_BRAOL; Uncharacterized protein
STRINGBo9g071530.13e-48(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-40G2-like family protein