PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_15037.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19540.4 Da PI: 7.5725 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.2 | 1.6e-10 | 32 | 152 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 +d+e++ +L++k+eg+ + + i e+ ++y+ ePw Lp++++ + +ew + k ++++ + ++g W g+ Rsa1.0_15037.1_g00001.1 32 SDSEIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPQTAHPilNPREWLYLGKPNRNN-------FgVDHEGCWVRIGSAV 110 699***************9998889998778**********5333234667887777665543.......336679********99 PP NAM 91 evlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 + s+ ++e +g + + kg+++ + ++W+m+eyrl Rsa1.0_15037.1_g00001.1 111 LIRSEeTDEIIGGTSRFRYRfrnKGDKHALRWSNWFMKEYRL 152 9999856667898888888777778999999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.536 | 23 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-18 | 32 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-6 | 32 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MLVISYDSQR IQYRLGMRTR MAGFGEEESG ISDSEIIEGF LRPKIEGEAV AIPGLIVELG 60 EELYTREPWL LPQTAHPILN PREWLYLGKP NRNNFGVDHE GCWVRIGSAV LIRSEETDEI 120 IGGTSRFRYR FRNKGDKHAL RWSNWFMKEY RLFNPTPHVI CKITEKLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_15037.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454870.1 | 1e-122 | PREDICTED: uncharacterized protein LOC108826005 | ||||
TrEMBL | A0A3P6ANR7 | 1e-105 | A0A3P6ANR7_BRAOL; Uncharacterized protein | ||||
STRING | Bra025701.1-P | 1e-102 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64105.1 | 1e-42 | NAC domain containing protein 27 |