PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13967.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 321aa    MW: 35783.3 Da    PI: 5.4593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13967.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-09248268526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C++Gd+C +aHg
  Rsa1.0_13967.1_g00001.1 248 PCPEFRK-GSCSRGDSCEYAHG 268
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.07E-184155No hitNo description
SuperFamilySSF484032.02E-1610157IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-1711167IPR020683Ankyrin repeat-containing domain
PfamPF127969.6E-1123126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.82257135IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00395787IPR002110Ankyrin repeat
PROSITE profilePS5008810.07292127IPR002110Ankyrin repeat
SMARTSM002480.009992124IPR002110Ankyrin repeat
SMARTSM003562.5E-5243269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5246270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619248270IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6248268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4276306IPR000571Zinc finger, CCCH-type
SMARTSM0035613278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.249278302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGDDEQSHLK FTLLLESAAS NDLSGFKSLI EEEGLDTVDR SGLWYGRRLG TTKMGFEERT  60
PLMIAALFGS KEIVDYIIST GLADVNRSCG SDGATALHCA VSGLSANSLE VVTLLLNGSA  120
DPESRDSCGN KPVDLMFPCL SPVFNGRKKV LERLLNGSNE ADVQEQEEEV EVGVEVLLSP  180
LRKEYPVDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR  240
KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDETNC SRRVCFFAHR  300
PDELRPLYTS TGSGVPSPRS S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13967.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457652.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_018457654.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A397XSW00.0A0A397XSW0_BRACM; Uncharacterized protein
TrEMBLA0A3P6CWM10.0A0A3P6CWM1_BRACM; Uncharacterized protein
TrEMBLM4CEK10.0M4CEK1_BRARP; Uncharacterized protein
STRINGBra002632.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein