PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_13724.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19757 Da PI: 9.9804 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.7 | 6.1e-08 | 22 | 47 | 17 | 42 |
HHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 17 rngilKKAeELSvLCdaevaviifss 42 + g+lKK +E+ +LC++++ ii+s+ Rsa1.0_13724.1_g00003.1 22 KRGLLKKTHEIFTLCGINAGAIIYSP 47 78**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.475 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-10 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.82E-18 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-15 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-5 | 22 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MTRRKVKLAF IVNNSSRKXX XKRGLLKKTH EIFTLCGINA GAIIYSPYDP TPEVWPSVEG 60 MNQVITTLRN LPEIDRHNNM VNQQEFVQQR ITKVHQLLLK KKKDNREVNL TEDMYRFLQI 120 GQLTIPAGGH NNPALARDLN DLGYLVYQYL NSLNRRIQIL EGGSDVEIGE SI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_13724.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB608492 | 8e-33 | AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444906.1 | 1e-102 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 3e-48 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A3P5ZG07 | 3e-59 | A0A3P5ZG07_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FIU3 | 3e-59 | M4FIU3_BRARP; Uncharacterized protein | ||||
STRING | Bra041022.1-P | 5e-60 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-50 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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