PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13592.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 292aa    MW: 32960.5 Da    PI: 8.0632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13592.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-077495426
                             ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                             ++C+ fa+ G C++G++C+ +Hg
  Rsa1.0_13592.1_g00001.1 74 PICS-FAAAGDCPRGSQCPHMHG 95
                             7899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-8426IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.9582950IPR000571Zinc finger, CCCH-type
SMARTSM00356223249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3617097IPR000571Zinc finger, CCCH-type
SMARTSM003560.00397196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-10120198IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.59E-12127203No hitNo description
CDDcd001620.00149138198No hitNo description
PROSITE profilePS5008912.386139197IPR001841Zinc finger, RING-type
SMARTSM001848.7E-8139196IPR001841Zinc finger, RING-type
PfamPF000976.3E-8139196IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180163172IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.39226254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685226255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNKGICSYG TRCRYEHVRT SQHKGDHGDN  60
KPLNLCYTHP REHPICSFAA AGDCPRGSQC PHMHGDICST CGKKCLHPFR PEEREEHTKE  120
CQKKQKHMEA LKKSQDIECS VCLDRVLSKA TPGERKFGLL TECHHPFCIQ CIRNWRSSAP  180
VSGMDVNSTL RACPICRKLS YFVVPSVVWY STPEEKKEII DIYKAKLRSI DCKHFNFGNG  240
NCPFGGSCFY KHAYSDGNLE EAVIRHLGSQ EGETAIADSV AGLSEFLGRV QF
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13592.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485412.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_018485413.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS61e-179C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A398A0D40.0A0A398A0D4_BRACM; Uncharacterized protein
STRINGBo3g061660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-166C3H family protein