PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13514.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 329aa    MW: 37490.1 Da    PI: 7.4726
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13514.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31180235156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Rsa1.0_13514.1_g00002.1 180 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 235
                              79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.395177237IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-27179238IPR009057Homeodomain-like
SuperFamilySSF466894.03E-17179238IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-29180235IPR006447Myb domain, plants
PfamPF002494.3E-6182233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016036Biological Processcellular response to phosphate starvation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0080022Biological Processprimary root development
GO:1901699Biological Processcellular response to nitrogen compound
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIKKLSNMDY KQKRERCGQY IEALEEERRK IQVFQRELPL CLDLVTQAIE ACKTELPGTD  60
TDNMYGQSEC SEQTTGECRP VLEQFLTTKD SSTSNEEEEF NDEHGNHNPD NDPEDKNMKS  120
DWLKSVQLWN QPDPLLPKEE GTQEKMVDTV VKKDESMKKE PMANCGERRK REVEKDGGRK  180
QRRCWSSQLH RRFLNALQHL GGPHVATPKQ IKELMKVDGL TNDEVKSHLQ KYRLHTRRPS  240
QTVPNNGISQ TQHLVVVEGI WVPQSDYSTG RTTGGATTSG TTTTTTGIYG GMAAPPLPQW  300
PSLSNFRPSC RNMSSYLLSL SAKEKVYSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00140DAPTransfer from AT1G13300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13514.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449911.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9FX671e-164HRS1_ARATH; Transcription factor HRS1
TrEMBLA0A078G6M40.0A0A078G6M4_BRANA; BnaA08g24340D protein
TrEMBLM4DJQ60.0M4DJQ6_BRARP; Uncharacterized protein
STRINGBra016734.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.11e-165G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]