PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_11827.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GATA | ||||||||
Protein Properties | Length: 196aa MW: 21671.6 Da PI: 10.3464 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 105 | 138 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Rsa1.0_11827.1_g00001.1 105 CMHCEITKTPQWRLGPMGPKTLCNACGVRYKSGR 138 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.635 | 99 | 135 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-15 | 99 | 149 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.9E-15 | 103 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 103 | 136 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.22E-12 | 104 | 151 | No hit | No description |
Pfam | PF00320 | 1.6E-15 | 105 | 138 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 105 | 130 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
ESSSSSSQTT NTTSLVLPGK HGRPRTKRPR PHVHEKDGVK DIVDSCLIVR IPKQFLSDHS 60 KMITKKKKKK AKVTSSSSSS GIDLEVNGNI NVDSYSSEQN PVRKCMHCEI TKTPQWRLGP 120 MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR CKGGSHTTEE 180 NDLQDLIPNN AYIGVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 30 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_11827.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189617 | 0.0 | AC189617.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465287.1 | 1e-142 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_018465288.1 | 1e-142 | PREDICTED: GATA transcription factor 8-like | ||||
Swissprot | Q9SV30 | 1e-93 | GATA8_ARATH; GATA transcription factor 8 | ||||
TrEMBL | A0A0D3CTV4 | 1e-107 | A0A0D3CTV4_BRAOL; GATA transcription factor | ||||
TrEMBL | A0A3P6FUL1 | 1e-107 | A0A3P6FUL1_BRAOL; GATA transcription factor | ||||
STRING | Bo6g068260.1 | 1e-108 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4975 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-86 | GATA family protein |
Publications ? help Back to Top | |||
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