PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_10484.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 175aa MW: 19528.2 Da PI: 4.4338

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_10484.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	2	57	5	59
S-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ Rsa1.0_10484.1_g00001.1 2 WAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 57 89********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	31.663	1	59	IPR003657	WRKY domain
SMART	SM00774	6.1E-35	2	58	IPR003657	WRKY domain
Pfam	PF03106	8.2E-26	2	57	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-25	2	59	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.1E-29	2	59	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MWAWRKYGQK PIKGSPYPRN YYRCSSSKGC LARKQVERSN LDPNIFIVTY TGEHTHPRPT 60 HRNSLAGSTR NKSQPVNPPP KPDHPSGQTV SGVKEELHLS PTTPLKENDD VQGTNGEEEV 120 NMEDEEIDEV EEEEDDDDDV DDLLIPNFAV RDRDDLFFAG NFPSWSAGSA GDGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-20	1	60	19	80	Disease resistance protein RRS1
5w3x_D	3e-20	1	60	19	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_10484.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246573	0.0	KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469798.1	1e-127	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-82	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	C4N0W3	1e-102	C4N0W3_BRANA; WRKY transcription factor 27.1 (Fragment)
STRING	XP_006401776.1	2e-98	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-80	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]