PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10151.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24050.8 Da    PI: 10.0792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10151.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689e-221961345
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             i+ ++ rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+  k
  Rsa1.0_10151.1_g00001.1 19 IKKETHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKK 61
                             8999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-28987IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-31968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.801969IPR002100Transcription factor, MADS-box
CDDcd002654.74E-341085No hitNo description
PRINTSPR004041.1E-161131IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTSKKKESMG RRRIPMVKIK KETHRQVTFS KRRAGLFKKA SELCTLCGAE IGIIVYSPAK  60
KPFSFGHPSV ESVLDRYLSR NDLSLAKTKK PQGNTAGSCE LNMVLTQTVS EVEEEKKKGQ  120
AMAETRKGNA ARRLVTNWWE GPVDEMNVVQ LQVMKCALEE LRKLVVSETN TVPFKEVKED  180
VFGFLDTNKV TAPSYANMTS GLSNAYHFGY GNGCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15982174MEF2C
5f28_B3e-15982174MEF2C
5f28_C3e-15982174MEF2C
5f28_D3e-15982174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10151.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438792.11e-159PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-109AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y7Y51e-152A0A397Y7Y5_BRACM; Uncharacterized protein
STRINGBo8g099550.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-112AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]