PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_09092.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18426 Da PI: 6.8649 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.2 | 6.4e-39 | 14 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+++l+yeA ar+rdPvyG+vg++++lq+ Rsa1.0_09092.1_g00001.1 14 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLHKRLDAVATLCYEALARLRDPVYGSVGHLFSLQH 99 7***********************9988********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ae+a+++++ Rsa1.0_09092.1_g00001.1 100 QVMNLQAEIAHVQAR 114 **********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.98 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-38 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTGNLNGSGR GEGPCGACKF LRRKCVSGCV FAPYFDAEQG TATFAAVHKV FGASNASKML 60 LRLPLHKRLD AVATLCYEAL ARLRDPVYGS VGHLFSLQHQ VMNLQAEIAH VQARLSTFQR 120 FSVIPTQQMQ QPPFDLAHNN EYPMDFVWEE EQLHQAGNED GELAMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 13 | 126 | 10 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 13 | 126 | 10 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_09092.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189498 | 1e-121 | AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436454.1 | 1e-121 | PREDICTED: LOB domain-containing protein 19-like | ||||
Refseq | XP_018436455.1 | 1e-121 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 2e-83 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | V4KMP1 | 6e-90 | V4KMP1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397722.1 | 1e-90 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 9e-86 | LOB domain-containing protein 19 |