PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_09034.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26244.4 Da PI: 6.5805 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.9 | 3e-09 | 1 | 27 | 20 | 46 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46 +lKKA EL vLCd +++v+ + ++g+l Rsa1.0_09034.1_g00001.1 1 MLKKALELTVLCDNKICVLHYNHDGNL 27 59***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.19E-10 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.517 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-5 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MLKKALELTV LCDNKICVLH YNHDGNLVST LPEDQSQVTD ILDKYRNLSD GEKLKKSTNL 60 SQFYNKKLVD EKKRSLTDAE KRKRFTKKVG DFKGSLLDQF RILEDRVRDL RCSHDHHHQS 120 PCLDVVSDKN HNFPEAYSYG FFPANEFPSS LIEEENPLMM SFGPHDLDQQ QSFTNLLMSG 180 DHVSTITDQY LPSPAPSSTL CSSNLHQGKF SVFLFNHETA TFTQLPNSAS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_09034.1_g00001.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467160.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL93, partial | ||||
TrEMBL | A0A3P5YBW8 | 1e-101 | A0A3P5YBW8_BRACM; Uncharacterized protein | ||||
STRING | Bo6g015480.1 | 1e-101 | (Brassica oleracea) | ||||
STRING | Bo6g015500.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11759 | 7 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G27070.1 | 2e-28 | AGAMOUS-like 53 |