PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G27070.1

Common Name

AGL53, F15P11.2

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 287aa MW: 32684.1 Da PI: 8.6045

Description

AGAMOUS-like 53

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G27070.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.3	9.5e-19	27	76	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 +++++ ++++ +s R ++++KKA ELS+LC+++v+vi+++ +gkl ++++ AT5G27070.1 27 SSSSTAKKTTNLSMREQTMFKKALELSTLCNIDVCVIYYGRDGKLiKTWP 76 57888899999*********************************856786 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-14	6	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.12	30	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-12	30	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-14	32	112	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.00E-22	35	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009089	anatomy	endosperm
PO:0020090	anatomy	embryo sac central cell
PO:0020093	anatomy	antipodal cell

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV 60 CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDTKLSE 120 KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW 180 TEPLMSGVSN TEQDLSTSSL SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS 240 GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	246851_at	4e-66
Expression Atlas	AT5G27070	-
AtGenExpress	AT5G27070	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G27070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G38620, AT5G49420, AT5G49490, AT1G46408
IntAct	Search Q7X9N2

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G27070

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141217	0.0	AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	F15P11	0.0	AF160760.1 Arabidopsis thaliana BAC F15P11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198059.1	0.0	AGAMOUS-like 53
Swissprot	Q7X9N2	0.0	AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBL	A0A178U9H7	0.0	A0A178U9H7_ARATH; Uncharacterized protein
STRING	AT5G27070.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5753	9	44
Representative plant	OGRP6766	2	18

Link Out ? help Back to Top
Phytozome	AT5G27070.1
Entrez Gene	832765
iHOP	AT5G27070
wikigenes	AT5G27070

Publications ? help Back to Top
Sessions A, et al. A high-throughput Arabidopsis reverse genetics system. Plant Cell, 2002. 14(12): p. 2985-94 [PMID:12468722] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] N Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Mol. Cell Proteomics, 2003. 2(11): p. 1234-43 [PMID:14506206] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Popescu SC, et al. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Li HJ, et al. Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance. Plant Cell, 2015. 27(10): p. 2880-93 [PMID:26462908] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]