PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08977.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23787.5 Da PI: 4.1504 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.3 | 1.9e-16 | 39 | 142 | 2 | 115 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p+G+rF+P+d+ + ++yLk+kv g+++++ + +e+ +i+++ P+dLp + +e+ew+ ++++ + + + ++ W Rsa1.0_08977.1_g00001.1 39 PAGCRFRPSDDMMANYYLKNKVLGQPMNARIIPEEChHIFSIPPRDLPG--YPRETEWHCYCRKPNGQ----DT-----QSLWTRV 113 89***************************655666689**********4..35789******986643....33.....368**** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapk 115 g+d++v++ g+ vg+k+t ++ ++++++ Rsa1.0_08977.1_g00001.1 114 GEDTTVFDPLGNSVGIKRTYALTEQEEES 142 ********************999665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-21 | 36 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.117 | 38 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-8 | 39 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MKDLLNECKA PISAKIDDKV KTDLPPFIKT FNTLKRFYPA GCRFRPSDDM MANYYLKNKV 60 LGQPMNARII PEECHHIFSI PPRDLPGYPR ETEWHCYCRK PNGQDTQSLW TRVGEDTTVF 120 DPLGNSVGIK RTYALTEQEE ESDDISLPGE IEPPRQEWFI EEISLPSSVA DTDLVLCHVI 180 LNKIEKEEAY EEEEDDDDDD DGEEEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08977.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444627.1 | 1e-134 | PREDICTED: uncharacterized protein LOC108816557 | ||||
TrEMBL | A0A3N6RUN2 | 1e-107 | A0A3N6RUN2_BRACR; Uncharacterized protein | ||||
STRING | Bo6g072200.1 | 6e-98 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20323 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 3e-51 | NAC family protein |