PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08500.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 342aa    MW: 39106.8 Da    PI: 5.6348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08500.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.31.2e-191258450
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  Rsa1.0_08500.1_g00001.1 12 SSYSLAATSLQSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 58
                             78999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.2081961IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-132293IPR002100Transcription factor, MADS-box
PfamPF003193.9E-102457IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRPPLSSNSS PSSYSLAATS LQSRLLTIFK KAQELTTLCD IEACVIHYGP DGELRTWPEN  60
RDKVRDLALR YIQLDQATRR KKSLNLYEFL KKNKKTTMTT SSFKKRAKKN IQELKYPVSD  120
HYSVDQINQL IQSLELSYST LQERRRFLAA KANLEDRQHL GTQSLNPSQF TKYPQESMFI  180
NQELCAYDQT SNNNFQHLCV SDHSAAQESG LPYQLMPYGG GYDQNMCTGN NFHVSSNTQD  240
YSVFPLELQE SVSNYGLNQL MQHEPYGFDQ NMYMSDITNN FNVVDPFLSN MLPDDFCFGF  300
QDPCGGNMVG NPSFSQDFNL DMSSSCVYEN RLLLQESTLP SL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08500.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474882.10.0PREDICTED: agamous-like MADS-box protein AGL81
SwissprotQ9FLL03e-62AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I5521e-154A0A078I552_BRANA; BnaA04g09910D protein
TrEMBLA0A0D3C0091e-154A0A0D3C009_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CBF51e-154A0A3P6CBF5_BRAOL; Uncharacterized protein
STRINGBo4g139560.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38740.16e-62AGAMOUS-like 77
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]