PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08409.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 159aa MW: 17792.9 Da PI: 9.9025 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 57.8 | 2.4e-18 | 56 | 118 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+kr+rrkq NReAA rsR+RK+ae +eL++ ++L aeN +L+ e+++lk + ++l+se+ Rsa1.0_08409.1_g00001.1 56 EREVKRQRRKQTNREAAERSRLRKQAEFDELAKHTEVLNAENASLRAEMNRLKRQREELTSEN 118 799**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.8E-13 | 52 | 115 | No hit | No description |
Pfam | PF00170 | 4.8E-16 | 56 | 118 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.0E-14 | 56 | 120 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.863 | 58 | 121 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.33E-10 | 59 | 115 | No hit | No description |
CDD | cd14702 | 7.64E-14 | 61 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
SESGGSANGP RNGSAGSSTP LPPVSQNMPV MPKTAAGAPT SAAPIPGMHR KVYQDEREVK 60 RQRRKQTNRE AAERSRLRKQ AEFDELAKHT EVLNAENASL RAEMNRLKRQ REELTSENNS 120 LKVQLLSFPP LEGINIKMEK DDQEPDTYQT VFTETKFVM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08409.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474085.1 | 1e-111 | PREDICTED: bZIP transcription factor 16-like | ||||
Swissprot | Q501B2 | 7e-56 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A3N6RZN3 | 7e-68 | A0A3N6RZN3_BRACR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A3P6A4S9 | 5e-68 | A0A3P6A4S9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E2L1 | 5e-68 | M4E2L1_BRARP; Uncharacterized protein | ||||
STRING | Bra023012.1-P | 8e-69 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3701 | 25 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-58 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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