PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_08129.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | RAV | ||||||||
Protein Properties | Length: 333aa MW: 37092.6 Da PI: 9.8578 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.8e-14 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ +kr++lg+f +eeAa+ ++ a+ +++g Rsa1.0_08129.1_g00003.1 65 SKFKGVVPQP-NGRWGAQIYEK-----HKRVWLGTFNEEEEAARVYDVAAHRFRG 113 79****9888.8*********3.....5************************998 PP | |||||||
2 | B3 | 100.4 | 1.1e-31 | 195 | 296 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ tpsdv+k++rlv+pk+ ae+h g++ +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Rsa1.0_08129.1_g00003.1 195 FEKTVTPSDVGKLNRLVIPKHQAEKHfplplsGSV--KGTLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLI 278 99****************************96655..6779********************************************* PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 F++++ ++++l++++ + Rsa1.0_08129.1_g00003.1 279 SFRRSNGQDQQLYIGWKS 296 ***987799999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-17 | 65 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.35E-25 | 65 | 123 | No hit | No description |
Pfam | PF00847 | 2.6E-8 | 65 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-20 | 66 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 66 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 66 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-39 | 188 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-31 | 192 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.75E-29 | 194 | 285 | No hit | No description |
PROSITE profile | PS50863 | 13.987 | 195 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-25 | 195 | 298 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-28 | 195 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEALSSVDES STSTVSIHTP AKIPPPPRTA NSSSPASLYR MGSGSSVVLD SENGVEAESR 60 KLPSSKFKGV VPQPNGRWGA QIYEKHKRVW LGTFNEEEEA ARVYDVAAHR FRGPDAVTNF 120 KPDLTLGNGD GDDGEEVEFL NAHSKYEIVD MLRKHTYREE LEQRKRKRNG NGGAKETALA 180 NVTVGTGFKT ATSLFEKTVT PSDVGKLNRL VIPKHQAEKH FPLPLSGSVK GTLLSFEDVN 240 GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK RLCAGDLISF RRSNGQDQQL YIGWKSKAGF 300 DQDTGRVVVR LFGVDIASVK SRNDVVKKED TEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-63 | 191 | 304 | 10 | 124 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_08129.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434660.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like | ||||
Swissprot | Q9LS06 | 1e-171 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A3N6PTF0 | 0.0 | A0A3N6PTF0_BRACR; Uncharacterized protein | ||||
STRING | Bo2g138650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 1e-164 | ethylene response DNA binding factor 3 |