PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07902.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 223aa MW: 24366.4 Da PI: 6.3904

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07902.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.4e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++Cv+apyf ae+ +++fa+vhk+FGasn +kll +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+ Rsa1.0_07902.1_g00002.1 11 PCGACKFLRRKCVAECVFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQH 96 7*******************999879****************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l++ela++k++ Rsa1.0_07902.1_g00002.1 97 QVMSLQEELAVVKTH 111 ********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.735	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-38	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSGSTTSGGS PCGACKFLRR KCVAECVFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI 60 PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLSTLQRLPP 120 QPKQQNNSQT EATSSTKAPL IATADHKNNN VSSSLSHIYG MSPEQQQQQQ PQEDTEVQTE 180 SVDFSTLLGL EDPLDRDGDL NTLAREFVSK YLAEGKYRPS SPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	4	112	4	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	4	112	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07902.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018465751.1	1e-167	PREDICTED: LOB domain-containing protein 31 isoform X2
Swissprot	O81322	1e-108	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A078JPX1	1e-143	A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBL	A0A291LR22	1e-143	A0A291LR22_BRARR; Transcription factor LBD31
TrEMBL	A0A3P5XT75	1e-143	A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBL	M4F8B0	1e-143	M4F8B0_BRARP; Uncharacterized protein
STRING	Bra037322.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-102	LOB domain-containing protein 31