PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07869.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 227aa    MW: 25228.9 Da    PI: 6.7921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07869.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-14611331696
                              EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  16 lvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              + ++ +f+++h   +++    k  +l++  s ++W+vk+  ++++    +t+GW+eF+ a++L++gD+ vF+++g+    lv++v
  Rsa1.0_07869.1_g00003.1  61 FNISVTFFSKHvvgKND--HVKIAKLRTdASDKTWTVKM--DGSK----FTDGWEEFAVAHNLRVGDITVFRHEGE----LVFHV 133
                              67899999999974333..3334555544999*******..9999....9**********************7664....44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-1144139IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-1555141IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-1159134No hitNo description
PfamPF023621.8E-865132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1877148IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.39184139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVDQSLYSPI NPHFFQPLXF YKVDILSNGG SVPLLSDQST LLPASSSRLP HSLHNTPFFS  60
FNISVTFFSK HVVGKNDHVK IAKLRTDASD KTWTVKMDGS KFTDGWEEFA VAHNLRVGDI  120
TVFRHEGELV FHVTALGPSC CEIQYTSSHN INDDSDDETN NIGNSSREKG KGVKNNLNPV  180
PQSLLHSSCY VGSVHGITEI DGVEVEEKSF QRFKRNPHRS SNACNGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07869.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594668.12e-76PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP34e-49REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078G5G19e-77A0A078G5G1_BRANA; BnaC07g12360D protein
TrEMBLA0A078HNX15e-75A0A078HNX1_BRANA; BnaA07g09400D protein
TrEMBLA0A0D3D6U39e-77A0A0D3D6U3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BMR19e-75A0A3P6BMR1_BRACM; Uncharacterized protein
TrEMBLM4D7I55e-75M4D7I5_BRARP; Uncharacterized protein
STRINGBra012445.1-P9e-76(Brassica rapa)
STRINGBo7g054150.11e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]