PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07706.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 574aa    MW: 64545.6 Da    PI: 6.9034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07706.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-141162247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                             + WTt+E++ll++av+++G ++W+++a++++       ++t+ +c++++ ++
  Rsa1.0_07706.1_g00002.1 11 QTWTTWEELLLACAVRRHGVDSWDSVAAEINkqnsssRTLTASDCRHKYTDL 62
                             68***********************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.748563IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5763IPR009057Homeodomain-like
SuperFamilySSF466899.36E-7965IPR009057Homeodomain-like
SMARTSM007171.4E-9965IPR001005SANT/Myb domain
PfamPF002498.0E-141162IPR001005SANT/Myb domain
CDDcd001677.47E-71263No hitNo description
SMARTSM002973.6E-15103348IPR001487Bromodomain
SuperFamilySSF473702.62E-18250347IPR001487Bromodomain
CDDcd043691.21E-18250343No hitNo description
PfamPF004391.4E-12255333IPR001487Bromodomain
PROSITE profilePS5001413.92258329IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.1E-15264361IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAKPENEENN QTWTTWEELL LACAVRRHGV DSWDSVAAEI NKQNSSSRTL TASDCRHKYT  60
DLKRRFSSPE GETVSEISWW LEELRKLRVD ELRREVERYD LSISSLQMKV KRLEDEREKE  120
EAEKVTGSLD LVKPAETGKN SDVPVIEPNR EIDESVKEEP NRIGGDGTEE KSVREDSGRG  180
SCESGAKDSE RGDSVREGND SPEFVEAKET SDVQSSASLP RKEETVGHDQ PDNEDQSLAV  240
NKTVVESGPL IDFMEILRSP PIGSHFWRRL ESQETPDYER IIRQHIDLDL IRTRVDEGYY  300
QSSKTKFFRD LLLLINNAKV FYGERSPESN SAAQLHELIK KQMTTLKTSN QTSPQKDEEP  360
LVTTSKEELT LLSLKPKVSV SVVKACRKRS SLAVRSSTTE PLKKKTKVVP TTDENEKKQV  420
SETEEEDETT DKDDEEPIVS KKTPRGRTTT SSAKKGVSRN VKTSLDDGDV SEQKKSDQEK  480
KGKSTKVGSK KQSAASFLKR MKGAETVPET VKDDSSSGKK GAEQRRSNSK HEKVVAGQKR  540
TPAAKKNTSA ASKIEASEKE EGSSTRPKKR TRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07706.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491993.10.0PREDICTED: uncharacterized protein LOC108862384 isoform X2
TrEMBLA0A3N6RGU40.0A0A3N6RGU4_BRACR; Uncharacterized protein
STRINGBo8g092340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-152DNA-binding bromodomain-containing protein