PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07698.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37849.4 Da PI: 6.5073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.7e-53 | 21 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL++kv + l +i+evd++++ePw+Lp+++k +e+ewyf+s rd+ky+tg r+nrat++gyWkat Rsa1.0_07698.1_g00001.1 21 LPPGFRFHPTDEELITFYLAAKVFHGGLCG-IHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKAT 105 79*************************877.78***************9889999******************************* PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdkevls +g+lvg+kktLvfykgrap+g kt+Wvmheyrle Rsa1.0_07698.1_g00001.1 106 GKDKEVLSGggGGALVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150 ********9878889****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-62 | 17 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.63 | 21 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-27 | 22 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLAVEDVLNE LAGEERNDRG LPPGFRFHPT DEELITFYLA AKVFHGGLCG IHIAEVDLNR 60 CEPWELPEMA KMGEREWYFY SLRDRKYPTG LRTNRATTAG YWKATGKDKE VLSGGGGGAL 120 VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KTGDRKNVGI 180 HNQISFLHNT SLSTTHQHHN HDLYHHLEIL PPLLEPSKTQ TNFPSLLYDD THQNYHNNLL 240 HGSSAHNVDG FKALISPAVS QLNGVIFSQE NSYYNNEEDN NFGVKTEQYS NGGNNDLDVR 300 DYLDNPFCPE AGYGLLGLSS SPGPLMLLDS PYVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 21 | 174 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07698.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ703969 | 0.0 | HQ703969.1 Raphanus sativus CUP-SHAPED COTYLEDON 3 (CUC3) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444483.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-180 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A397YS59 | 0.0 | A0A397YS59_BRACM; Uncharacterized protein | ||||
TrEMBL | F5B9T6 | 0.0 | F5B9T6_RAPSA; CUP-SHAPED COTYLEDON 3 (Fragment) | ||||
TrEMBL | M4DGX4 | 0.0 | M4DGX4_BRARP; Uncharacterized protein | ||||
STRING | Bra015750.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-163 | NAC family protein |
Publications ? help Back to Top | |||
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