PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07685.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 132aa    MW: 15212.2 Da    PI: 6.5247
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07685.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.89e-111298299
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
             HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
                             Fl++ly+ +++++++++ sws++g+sf++++  ef+++v+p   +   ++S +     Y F+++ +e          +eF++++F +g
  Rsa1.0_07685.1_g00002.1 12 FLNRLYNAVDNPATESIASWSQSGKSFIIWNLVEFSRHVIPGSMQ-LFMESIICG-CGYRFRRIGSEG---------NEFANDNFVRG 88
                             9***************************************97643.345555554.369999998887.........57********* PP

                             XXXXXXXXXX CS
             HSF_DNA-bind 90 kkellekikr 99
                             + +l++ki r
  Rsa1.0_07685.1_g00002.1 89 QPDLMKKIPR 98
                             *****99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-12899IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-131098IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-131198IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-111298IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MLGIERNSDD GFLNRLYNAV DNPATESIAS WSQSGKSFII WNLVEFSRHV IPGSMQLFME  60
SIICGCGYRF RRIGSEGNEF ANDNFVRGQP DLMKKIPRPG FFIGKNDLVE VNNILTKEKE  120
EFSHRYENRN DK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07685.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602517.13e-20heat stress transcription factor A-4a-like
TrEMBLV4KZ176e-42V4KZ17_EUTSA; Uncharacterized protein
STRINGXP_006401777.11e-42(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1954256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-17heat shock factor 1