PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07532.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 285aa    MW: 32454.8 Da    PI: 4.5944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07532.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.11.6e-27281511127
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              lp Gf F+Ptde+l+++yL++k+++k+ +   +i+e++iy+++P++Lp  ++ ++++ w+fF++r  k    +   r t sg+W +
  Rsa1.0_07532.1_g00002.1  28 LPTGFLFRPTDEDLLDYYLRRKLANKTYPN--AISELGIYDHDPSELPsLSMLKSTEVWFFFTRRILKD---DLVIRETPSGVWLS 108
                              699************************887..8***************656666778999999998875...579999******** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                               g  k++++k+++ +g+ +++ fy + ++   e+t+W+m+ey+
  Rsa1.0_07532.1_g00002.1 109 DGDVKHIKDKSDRFIGTNQSFKFYLKpNNTPLEETNWMMEEYQ 151
                              ************************543666668*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-3223169IPR003441NAC domain
PROSITE profilePS5100533.67628169IPR003441NAC domain
PfamPF023651.3E-1829151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGRALERGR ESLPLSSAPT PSPMAIDLPT GFLFRPTDED LLDYYLRRKL ANKTYPNAIS  60
ELGIYDHDPS ELPSLSMLKS TEVWFFFTRR ILKDDLVIRE TPSGVWLSDG DVKHIKDKSD  120
RFIGTNQSFK FYLKPNNTPL EETNWMMEEY QRALQVDNHG FVLCKIFLKK PPVKRTPVKR  180
TPPATVTDTV MVEAHEEEIL GPCVLNREDS LPSSDDDDDI DGVRYMLPRT PVKRVPPATV  240
TDTVMVEAHE EEILGPCVLN REDSLPSSDD DDDIDGVRYM LPRTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-152617515171NO APICAL MERISTEM PROTEIN
1ut4_B7e-152617515171NO APICAL MERISTEM PROTEIN
1ut7_A7e-152617515171NO APICAL MERISTEM PROTEIN
1ut7_B7e-152617515171NO APICAL MERISTEM PROTEIN
3swm_A8e-152617518174NAC domain-containing protein 19
3swm_B8e-152617518174NAC domain-containing protein 19
3swm_C8e-152617518174NAC domain-containing protein 19
3swm_D8e-152617518174NAC domain-containing protein 19
3swp_A8e-152617518174NAC domain-containing protein 19
3swp_B8e-152617518174NAC domain-containing protein 19
3swp_C8e-152617518174NAC domain-containing protein 19
3swp_D8e-152617518174NAC domain-containing protein 19
4dul_A7e-152617515171NAC domain-containing protein 19
4dul_B7e-152617515171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07532.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2388444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-20NAC domain containing protein 2