PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07424.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 439aa    MW: 49666.8 Da    PI: 6.823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07424.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.69.1e-101872151846
                              HHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                   SRF-TF  18 ngilKKAeELSvLCdaevaviifsstgkl 46 
                              +++lKKA EL vLCd e++v+ +  +g+l
  Rsa1.0_07424.1_g00001.1 187 KTMLKKALELTVLCDNEICVLHYDRDGNL 215
                              79**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037323.2E-14397IPR005162Retrotransposon gag domain
PROSITE profilePS500668.914162222IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-10186256IPR002100Transcription factor, MADS-box
PfamPF003193.8E-5187215IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
IYKSILRFND AAEIWTDLLT RFHITNLSRS YQLSQQIWSL QQGPLDLATY YTSLKTLWDE  60
LDGASCITTC HHCDCCKAME TKANHSKVIK FLAGLNESYA VIRSQIIMKK TLPELSEIYN  120
LLDQDHNQRN IMHVHNASAF HVSAPAPVSP QINVAQSGFQ PKQTRPIIVS LVSFSLSRAQ  180
APSSLSKTML KKALELTVLC DNEICVLHYD RDGNLVNTLP EDQSQVTGIL DKYRNLSDGE  240
KLKKSTNLSQ FYNKKLVDEK KRSLTDAEER KRFTKKVGDF KGSLLDQFHM LKDRVRDLRY  300
SQDHYHQTQQ DQDQSPFLDV VSDKNHNIPE ASSYGFVPAS DFSSSLIEEE NPLMNFIPHD  360
LDQQQSFTNL LMSGDHHVST ITDQYLPSPA PSSTVCSSNH HQGKFSVFLF NHETATFTQL  420
PNSASSSFGQ GFTGTLTSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07424.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476964.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A0D3CP911e-108A0A0D3CP91_BRAOL; Uncharacterized protein
TrEMBLA0A3P5YBW81e-108A0A3P5YBW8_BRACM; Uncharacterized protein
STRINGBo6g015480.11e-109(Brassica oleracea)
STRINGBo6g015500.11e-109(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.15e-26AGAMOUS-like 89