PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G27580.1

Common Name

AGL89

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 223aa MW: 25589.9 Da PI: 8.8794

Description

AGAMOUS-like 89

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G27580.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.3	5.4e-20	27	76	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 +++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +g+l ++++ AT5G27580.1 27 SSSSTAKKTTNLSMREETMFKKALELSTLCDIEVCVIYYGRDGELiKTWP 76 57888899999********************************9856886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.0E-14	6	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.54	30	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-12	30	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-15	32	112	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.18E-20	35	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025074	anatomy	embryo sac

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV 60 CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK RTNLSLFLRK KILDDNKLSE 120 KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV 180 TGVSNTEQDL STSPLSNHQS KYSVFVYNHD SGSFYQVPDS ICF

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	246788_at	1e-122
Expression Atlas	AT5G27580	-
AtGenExpress	AT5G27580	-
ATTED-II	AT5G27580	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G27580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G38620, AT5G49420, AT1G46408

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G27580

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007478	0.0	AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence.
GenBank	AY141226	0.0	AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds.
GenBank	BT025291	0.0	BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198110.1	1e-164	AGAMOUS-like 89
Swissprot	Q7X9N2	1e-130	AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBL	Q7XJL1	1e-163	Q7XJL1_ARATH; AGAMOUS-like 89
STRING	AT5G27580.1	1e-163	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5753	9	44
Representative plant	OGRP6766	2	18

Link Out ? help Back to Top
Phytozome	AT5G27580.1
Entrez Gene	832818
iHOP	AT5G27580
wikigenes	AT5G27580

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]