PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07382.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 296aa MW: 33387.6 Da PI: 9.2097

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07382.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.9	2.1e-33	155	212	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ Rsa1.0_07382.1_g00002.1 155 EDGYRWRKYGQKAVKNSHYPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 212 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-35	139	214	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-29	146	214	IPR003657	WRKY domain
PROSITE profile	PS50811	31.594	149	214	IPR003657	WRKY domain
SMART	SM00774	3.0E-38	154	213	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	155	212	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSNETKYLCN YQYPSSFSLH EMMNLPSSTP SSYGNSRLDP SSYSYDSLLQ KTFGLSPSSS 60 EVFNSSIDQE SKRDASNDAT GETPARVSAS SSSSEAGHPG KDSGKSQKKR ELSEDGCEEN 120 QSSKKLGKTK KMEEKKKQRE PRVSFMTKSE VDHLEDGYRW RKYGQKAVKN SHYPRSYYRC 180 TTQRCNVKKR VERSFQDPTV VITTYEGQHN HPIPTNHRGS STAAAMYSAN FMNPRSLTHE 240 MFPTAAYTSS GSAASAYGYG QSGYGNANPN SYQEYRQGEY ELLKEIFPSI FFKQER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	145	214	8	77	Probable WRKY transcription factor 4
2lex_A	2e-28	145	214	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	136	KKLGKTKKMEEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07382.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246575	0.0	KC246575.1 Brassica napus WRKY transcription factor 28.2 (WRKY28.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449592.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-146	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D3DET2	1e-169	A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBL	A0A3P6ER93	1e-169	A0A3P6ER93_BRAOL; WRKY transcription factor
STRING	Bo7g105800.1	1e-170	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-116	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]