PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_07171.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 165aa MW: 19220.9 Da PI: 9.4509

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_07171.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	52.2	1.7e-16	12	100	1	100
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 aFl+k ye+++d++++++isw ng++fvv+++ + ++++L+++ +nfa F + YgF+k++ ++ eF+ + F Rsa1.0_07171.1_g00001.1 12 AFLSKAYEMVDDPSTDKIISWGPNGTTFVVWKPLKCSRDLLTRHLGITNFARF----ESYGFSKMTVCGQQ-------LEFECSDF 86 69***************************************9999999987....79*****999.......**** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrk 100 kg+ ell+ki + Rsa1.0_07171.1_g00001.1 87 VKGHPELLDKIGDR 100 ********9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-19	5	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.3E-21	9	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-17	10	97	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-14	13	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDLSPRRNRI HAFLSKAYEM VDDPSTDKII SWGPNGTTFV VWKPLKCSRD LLTRHLGITN 60 FARFESYGFS KMTVCGQQLE FECSDFVKGH PELLDKIGDR YVAKLRAFHE KRYKPFEDKL 120 KNAKTKEEWD LAVKEFFENN SKERRESRLR METSPPPAQV PSNGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_07171.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450109.1	1e-122	PREDICTED: heat stress transcription factor A-4c-like
TrEMBL	A0A078GTE4	4e-71	A0A078GTE4_BRANA; BnaCnng04980D protein
TrEMBL	A0A0D3DMG4	4e-71	A0A0D3DMG4_BRAOL; Uncharacterized protein
STRING	Bo8g049370.1	7e-72	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14212	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	4e-19	heat shock factor 1