PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07073.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 264aa    MW: 30867.2 Da    PI: 9.9375
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07073.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-1820571350
                             HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             ++ R++ ++KKA+ELS+LC++ev+vi+++s g+l++++
  Rsa1.0_07073.1_g00002.1 20 LTSRQENVFKKASELSILCGVEVCVIYYGSYGELKTWP 57
                             567**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.008659IPR002100Transcription factor, MADS-box
CDDcd002661.26E-161181No hitNo description
PROSITE profilePS5006611.0592060IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-162089IPR002100Transcription factor, MADS-box
PfamPF003196.1E-122356IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASSSSSRFK KPSSSEAKRL TSRQENVFKK ASELSILCGV EVCVIYYGSY GELKTWPADR  60
EKVKDMARRY SELSETQRSK KQYDLRKVLE SIKKDDESKK KKTKTKKRAK LGSHYKYPDW  120
DPRFDNYSAE KLEELIMSLE RSQTMMQRRL GAVVEAQTQK RNMHYTNMAR QEQMMIQQRP  180
NQASMDLFNP RISTLSQSQA STSASNQAYS LAPDPLTIYQ DPCMEEMYSS TWIGQHRMSS  240
LSIRFDLCQS LKDYRNIFLY IYFA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07073.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488247.11e-167PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB27e-65AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A0D3BC092e-98A0A0D3BC09_BRAOL; Uncharacterized protein
STRINGBo3g071680.13e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-51AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]