PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_06785.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CAMTA

Protein Properties

Length: 164aa MW: 18532.7 Da PI: 6.5026

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_06785.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	107.2	1.1e-33	26	92	52	118
CG-1 52 kDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 kDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n+++q cyw+Le+el +iv+v+ylevk Rsa1.0_06785.1_g00002.1 26 KDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENLQMWCYWMLEQELMHIVFVQYLEVK 92 9***************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	1.0E-24	1	92	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	44.174	1	97	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.3E-27	25	91	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MYSSLAPYLS SSRSAILDID CFELLKDGHN WRKKKDGKTV KEAHEKLKVG SIDVLHCYYA 60 HGEDNENLQM WCYWMLEQEL MHIVFVQYLE VKGNRISSSG IKENNSNSLS GSTSVNIDST 120 AHTSSKSSPL CEDANSGNRD CWIHGNIVKE NDSQRLVGVL PRHD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_06785.1_g00002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112123.1	9e-79	PREDICTED: calmodulin-binding transcription activator 2
Refseq	XP_013661269.1	8e-79	calmodulin-binding transcription activator 2-like
Refseq	XP_013661296.1	8e-79	calmodulin-binding transcription activator 2-like
Swissprot	Q6NPP4	1e-59	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A3P5XW09	1e-77	A0A3P5XW09_BRACM; Uncharacterized protein
STRING	Bra037769.1-P	2e-78	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19280	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	1e-64	ethylene induced calmodulin binding protein

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]