PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_06774.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 232aa MW: 26771 Da PI: 9.0872 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 29 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Rsa1.0_06774.1_g00001.1 29 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 73 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.13E-14 | 9 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.756 | 24 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-20 | 28 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 28 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 29 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-11 | 33 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MERQKDMYEK LMKTTCEKGK RALKLYLLRG QITPHEETII LELHAKWGNR WSTIARSLPG 60 RTDNEIKNYW RTHFKKKTKS PTNNAEKTKS RILKRQQFQQ QRQMELQREQ QLLQFNQIDM 120 KKIMSLLDDD NNNNNGDNDF SSNSSGSYGE DGAFYVPHQI TNPTPNSGHD PNGNGVFPVA 180 PVPTPNVNEN YAIWNGIWNL DLVEGQGSFG DGACAPRKHC FQNWPIPFDL SF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_06774.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189491 | 0.0 | AC189491.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489634.1 | 1e-113 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A0D3BD12 | 1e-96 | A0A0D3BD12_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AZN8 | 1e-96 | A0A3P6AZN8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g083130.1 | 2e-97 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-77 | myb domain protein 305 |