PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_06693.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 138aa MW: 16096.7 Da PI: 7.8474 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.8e-07 | 97 | 120 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+ +G C +G+ C FaHg Rsa1.0_06693.1_g00001.1 97 GEVCPEFRHGGDCTRGEECGFAHG 120 589********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.03E-5 | 93 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.441 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MDVEHHNSSH IGRPTVVIPS RKLLTSAKSP SSASSPHKDY YYDSDSDDPY AGDHFRMYEF 60 KIRRCTRSRS HDWTDCPFSH PGEKARRRDP RRYHYTGEVC PEFRHGGDCT RGEECGFAHG 120 VFECWLHPSR YRTEACKD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_06693.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB011475 | 9e-91 | AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2. | |||
GenBank | AY034916 | 9e-91 | AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | AY142542 | 9e-91 | AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | CP002688 | 9e-91 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481822.1 | 2e-98 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
Swissprot | Q9FKW2 | 5e-76 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | A0A078FJF8 | 7e-80 | A0A078FJF8_BRANA; BnaA09g17030D protein | ||||
TrEMBL | A0A3P6DTV8 | 8e-80 | A0A3P6DTV8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g059770.1 | 1e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44260.1 | 9e-66 | C3H family protein |