PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06656.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 325aa    MW: 37705.7 Da    PI: 4.7671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06656.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.52.4e-102013210128
                      NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                              +de  ++ yL+   ++ +   + ++ ++++++ +P+++     ++e+  + F+   ++  +  r+    +sg W+  g+dk ++++
  Rsa1.0_06656.1_g00001.1  20 NDEKTMSIYLQSMKDSGDSWPQYFFGDTNLFTKNPSEIL----ESENPFFVFVYPITE--SCGRTDG-CDSGGWRIIGRDKLIKDE 98 
                              578888889988877777544467999999999999995....233444555544443..3446666.47899***********98 PP

                      NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               + +  g kk+L f  +++ +g k +Wvm+++rl
  Rsa1.0_06656.1_g00001.1  99 eTAKILGFKKILKFCGETKARGYKRTWVMEQFRL 132
                              556679*********99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.77711150IPR003441NAC domain
SuperFamilySSF1019413.4E-2020148IPR003441NAC domain
PfamPF023652.0E-520132IPR003441NAC domain
PROSITE profilePS5100511.836175324IPR003441NAC domain
SuperFamilySSF1019413.14E-18191322IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEIRVAKSA YTKDDHSKAN DEKTMSIYLQ SMKDSGDSWP QYFFGDTNLF TKNPSEILES  60
ENPFFVFVYP ITESCGRTDG CDSGGWRIIG RDKLIKDEET AKILGFKKIL KFCGETKARG  120
YKRTWVMEQF RLPSKWNPKQ DHVVCKIQLL FQTEISYLLA KHFSYSSDPL PPTQSLPAYG  180
VCLANPQDDG AYHLQTIFDS VGNKWPSYVT NDVFCVHPST LVDHKDMRFL ESGLCIFANQ  240
TEDCGYTDGC ESGRWRIMEE DDAIYSMSHE VMGYRRVFKF CEEDEDRFFD IENGEEVLLT  300
WIMEEYRLVE EAMKDKVLCV IKLCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06656.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438492.10.0PREDICTED: uncharacterized protein LOC108810920
TrEMBLA0A3P6FTR40.0A0A3P6FTR4_BRAOL; Uncharacterized protein
STRINGBo1g091580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-117NAC domain containing protein 23