PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60280.1
Common NameANAC023, NAC023, T13D8.17
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 347aa    MW: 40571.5 Da    PI: 7.2841
Description NAC domain containing protein 23
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.31.3e-143714811128
          NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLv 107
                  d+ ++++yLk+ + + +   +++i++vd+++ +P++     ++ ++   f + + +++ +  r+    +sg W+  g+dk ++sk +g+  g kk+L 
  AT1G60280.1  37 DDVIISRYLKRMIVNGDSWPDHFIEDVDVFNKNPNEEF---HS-QSPR-FVIVKPRTE-NCGRTDG-CQSGCWRIIGRDKLIKSKeTGKILGFKKILK 127
                  77799*******98888666588***********9863...22.2333.444444444.4456666.479*************99778889******* PP

          NAM 108 fykgrapkgektdWvmheyrl 128
                  f  +++p+  k +Wvm+eyrl
  AT1G60280.1 128 FCLKKKPREYKRSWVMEEYRL 148
                  *******************98 PP
2NAM26.32e-0821132418127
          NAM  18 yLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.... 109
                  yL+  +  + ++      + d+y+++P +L   +  k +e  +  F++r k+     ++      g W+    ++ ++s kg++ g ++++ f     
  AT1G60280.1 211 YLETIIGYDGNTW-PSYVTNDVYRLHPLTLVdpQDDKFKEFGTCIFANRTKTCG---KTDECDGGGCWRIVEGHRVIKS-KGKVLGYRRIFQFSenee 303
                  5555555555444.3355679*********521333334446688888877654...56667789****9999999998.999***********4444 PP

          NAM 110 .....kgrapkgektdWvmheyr 127
                       +   ++++kt W+++eyr
  AT1G60280.1 304 prnvcE--GEDPKKTAWFIEEYR 324
                  433222..33345*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.16827166IPR003441NAC domain
PfamPF023654.9E-936148IPR003441NAC domain
SuperFamilySSF1019412.22E-2637165IPR003441NAC domain
SuperFamilySSF1019415.23E-27181340IPR003441NAC domain
PROSITE profilePS5100518.246193341IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MKVEDEATYE LIKDELMKAE DEATYWLIKE ELIKAEDDVI ISRYLKRMIV NGDSWPDHFI  60
EDVDVFNKNP NEEFHSQSPR FVIVKPRTEN CGRTDGCQSG CWRIIGRDKL IKSKETGKIL  120
GFKKILKFCL KKKPREYKRS WVMEEYRLNN NLNCKQDHVI CKIRFMFDAE ISFLLAKHFS  180
CLSTRSPLPA NQLLPAYGVC FFDSEAEGAF YLETIIGYDG NTWPSYVTND VYRLHPLTLV  240
DPQDDKFKEF GTCIFANRTK TCGKTDECDG GGCWRIVEGH RVIKSKGKVL GYRRIFQFSE  300
NEEPRNVCEG EDPKKTAWFI EEYRPDENNK KDKVLCVIKF LIPLNQR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184066930.0
Genevisible264272_at0.0
Expression AtlasAT1G60280-
AtGenExpressAT1G60280-
ATTED-IIAT1G60280-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0301010.0BT030101.1 Arabidopsis thaliana At1g60280 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176234.10.0NAC domain containing protein 23
TrEMBLA0A178W1M50.0A0A178W1M5_ARATH; Chalcone-flavonone isomerase family protein
TrEMBLO807510.0O80751_ARATH; At1g60280
STRINGAT1G60280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]