PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06452.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 489aa    MW: 54015.8 Da    PI: 8.9162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06452.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-14556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++WT+eE+e l+ +v+++G+g Wk I r  +      +R+  ++k++w+++
  Rsa1.0_06452.1_g00001.1  5 KLKWTEEEEEALLAGVEKHGPGKWKHILRDPQfahplSNRSNVDLKDKWRNL 56
                             689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.237161IPR017930Myb domain
SuperFamilySSF466892.58E-16362IPR009057Homeodomain-like
SMARTSM007172.7E-10459IPR001005SANT/Myb domain
PfamPF002496.6E-11556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
CDDcd116601.68E-15756No hitNo description
SMARTSM005262.5E-16119185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.25E-13120200IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-11120196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.035121197IPR005818Linker histone H1/H5, domain H15
PfamPF005382.6E-10123195IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGNQKLKWTE EEEEALLAGV EKHGPGKWKH ILRDPQFAHP LSNRSNVDLK DKWRNLSVPP  60
DIQGSNDKVR TPKIKAAALN LAAAATTTSI PSPVAPPLPL TGSSVLNLDD CWNTMMVDAK  120
NAPRYDGMIF EALSALTDPN GSDVTTIFNF IEQEKHQMPA TFKRVLGSRL RRLAAQGKIE  180
KVNQLKAGTQ NFYKMNGNSF SGMRTPVVAR PKEANVKPRQ QVPTVSQGKV SHASGTAAFK  240
LVEVEKKLEM VKAAAAEIDK MIQLTEKAET ILLLAEELHE AWKDCGTELR FVEQKKQEAQ  300
CFVDQIEGRD TPPTITELHE KLLNHEAKLL AATDVAPVST PVTANAVQQR NNNYQNRHNN  360
NNSYQRNNNY QRNNTYQPRA ENRSPKPYLG RCQICGVQGH SAKRCSQLLS YQSASSPQAT  420
PFRPHQPRAN LASSSSYSSE AWLLDSGATH HLTSDLQNLS LHQPYQGNDD VMIADGTGEG  480
SQHGGPIAP
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06452.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-34AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436764.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_018439463.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-104TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0D3DWT31e-137A0A0D3DWT3_BRAOL; Uncharacterized protein
STRINGBo8g104830.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-100MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]