PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_06364.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GeBP | ||||||||
Protein Properties | Length: 161aa MW: 18081.6 Da PI: 8.1961 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 31.2 | 6e-10 | 9 | 56 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 v++ q + Kir+L++K++ + +g + + s++hd+ +f ls+++Wg Rsa1.0_06364.1_g00002.1 9 GVNQIQTIGKIRQLQRKYTSMACS--NGWDWEPSEAHDRTCFALSRQLWG 56 48999***************9999..9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.5E-7 | 10 | 56 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKTVITTEGV NQIQTIGKIR QLQRKYTSMA CSNGWDWEPS EAHDRTCFAL SRQLWGPNGL 60 FTAAKVGMSA RGPPSSALGD DEDVPGGDLE QQKWFDKSFL VQSIASSSGL DEDTVKLRWS 120 SAPVESKKKI EEMMKALRPK ELAYVSEKAK FMQKLIYENL F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_06364.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467019.1 | 1e-114 | PREDICTED: probable transcription factor At1g61730 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 2e-20 | DNA-binding storekeeper protein-related transcriptional regulator |