PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G44810.1
Common NameT12C22.8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 296aa    MW: 32953 Da    PI: 5.1263
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G44810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.26.7e-35120210197
       DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  k+fq+lw++eDei+lLqG+idfka+tg+s++dd+++f++++k+ isf+vsk q+ +Kir LKkK+ + +kk      + ++ +hd+k+++l+k+iWg
  AT1G44810.1 120 KKFQSLWTKEDEISLLQGMIDFKAETGTSAHDDMNGFFDIAKRYISFDVSKIQFGDKIRGLKKKYFGVRKK------KGLDLDHDKKCLGLAKSIWG 210
                  68*********************************************************************......677799*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.6E-25122210IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNKKLLNPLE DPPTASSSED VDEEISSGED EKEHISNSSS SEEENELKDL STQTLNSPST  60
EAPTLDSGSE TNSDSDKPIV LTSQKKKEGT DSSGTKRASE GTSSKDIKRA KKVSGDDDNK  120
KFQSLWTKED EISLLQGMID FKAETGTSAH DDMNGFFDIA KRYISFDVSK IQFGDKIRGL  180
KKKYFGVRKK KGLDLDHDKK CLGLAKSIWG LDGKEVVVLG GDSETSNWFE KSFLVRVVAR  240
LGVDECIVKW KWSKVSKETK KRIEEKMKMV EAKELELLSQ KIDVLKEVAS VIAETI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.148830.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306938450.0
Genevisible261337_at0.0
Expression AtlasAT1G44810-
AtGenExpressAT1G44810-
ATTED-IIAT1G44810-
Function -- GeneRIF ? help Back to Top
  1. GPL4 inhibits the growth of roots exposed to toxic metals by modulating reactive oxygen species concentrations, thereby allowing roots to colonize noncontaminated regions of the rhizosphere.[GPL4]
    [PMID: 27768815]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G44810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G44810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428610.0AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds.
GenBankAY0725040.0AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT12C220.0AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564491.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ9LPF00.0STKLB_ARATH; Probable transcription factor At1g44810
TrEMBLA0A178W9440.0A0A178W944_ARATH; Uncharacterized protein
STRINGAT1G44810.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Representative plantOGRP4222523
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]
  2. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]