PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06359.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 314aa    MW: 33840.5 Da    PI: 8.7329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06359.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.6e-13107132227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++ C++f+rtGtCkyG++Ck++H++
  Rsa1.0_06359.1_g00001.1 107 GQPVCQHFMRTGTCKYGASCKYHHPR 132
                              5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-6105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.277105133IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6110132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.50.50.606.8E-13222278IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519051.26E-13222279IPR023753FAD/NAD(P)-binding domain
PfamPF134505.6E-8226277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MERYGRAGEE GLRSDPSIEW TSHGVQTGVE GNNLRGIILF LKCVFFVASM WRLGLSGGGA  60
GGGGGGGEAY PERSHEPDCI FVERRLRVVE GVRGGVGGDG ALPDRMGQPV CQHFMRTGTC  120
KYGASCKYHH PRQGGGGSVA HVSLSSCNIS FVKSQCFFLC NFRTHTATPY HEGSVFTVGR  180
QGDDLSIKDL LSVNQNNFYS VIIVNQAQSQ RFSRSRYNVV QPSVIVIGSG ISGLAAARNL  240
SEGSFNVTVP KSGGRIGGGI HTYYLFGCPV DMGAFCYALY DMHGKKIPPQ LVTQVGDAFK  300
RILQEVKALP FCLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258GGRIGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06359.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486149.17e-43PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU42e-42C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLR0HYC64e-41R0HYC6_9BRAS; Uncharacterized protein
STRINGXP_010486149.13e-42(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.15e-41C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]