PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_06339.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 30017.7 Da PI: 5.2073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.9 | 5.2e-16 | 25 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyW 83 lpp++ Fh +de+l++ +L++ ve+++ ++ i+++ d+y++ P+ L ++++ +++ w+fF +++ +r+ r + g W Rsa1.0_06339.1_g00001.1 25 LPPCYGFHASDEQLLQLFLRPFVERSEPRT-CPIHNItDVYSSSPEILTGTYEQgGDDTWFFFGTKRYLDV-TSRNDRvIEGGGEW 108 699************************888.5688888**********95444426668888888777665.5788883555899* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g k++++ +++l g k+t fy a+ + W m+e +l Rsa1.0_06339.1_g00001.1 109 VRKGAIKKLFE-NNTLLGFKRTQDFY---AQGMDLAYWRMEELSL 149 ***********.999***********...4444578999999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-19 | 19 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.685 | 25 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-9 | 26 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDQSPAPANL VDSTTSFQLH RNLNLPPCYG FHASDEQLLQ LFLRPFVERS EPRTCPIHNI 60 TDVYSSSPEI LTGTYEQGGD DTWFFFGTKR YLDVTSRNDR VIEGGGEWVR KGAIKKLFEN 120 NTLLGFKRTQ DFYAQGMDLA YWRMEELSLR VEVCIDLYHL IRTCLITCWQ RYMQFPRGIK 180 KQKLKSVSTE STPPAKKSKQ DHPVEDITPP TQNDASIPGF TAQQTETDQS PTADEDFIYP 240 SEQERREWMK ETFLNPRDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_06339.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443649.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
TrEMBL | A0A397YLT8 | 2e-74 | A0A397YLT8_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | M4CGA4 | 2e-73 | M4CGA4_BRARP; Uncharacterized protein | ||||
STRING | Bra003237.1-P | 4e-74 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20322 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 6e-15 | NAC domain containing protein 64 |