PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G56530.1 | ||||||||
Common Name | anac064, NAC064, T5P19_180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36755.8 Da PI: 5.4282 | ||||||||
Description | NAC domain containing protein 64 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.3 | 4.4e-34 | 53 | 180 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppG+rF P+d+el+ +yLk+ +g+k++l +v i++v+iy+++P++L k k+++k+w++ s+r k+ + g+ ++r+ + gyW+at +++ + ++ AT3G56530.1 53 PPGYRFVPKDQELIFHYLKPFSQGNKCSLLNVpIHRVNIYESNPQHLSeKYEKGNDKDWFYISERTKTGKAGRSNKRVDNGGYWSATVAAQKINA-GN 149 9****************************9999**************93444557779999999999999999999999***************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vg k++L +y g++++++k dW+m+ey + AT3G56530.1 150 GIVGYKTSLEYYVGKQSNSVKGDWLMQEYWF 180 99***************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-43 | 40 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.835 | 52 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-17 | 53 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAIPQRNKRK ARSSPERLTQ PPELPHNSDV PSSSSSSAAD NFFSWSTKQF AFPPGYRFVP 60 KDQELIFHYL KPFSQGNKCS LLNVPIHRVN IYESNPQHLS EKYEKGNDKD WFYISERTKT 120 GKAGRSNKRV DNGGYWSATV AAQKINAGNG IVGYKTSLEY YVGKQSNSVK GDWLMQEYWF 180 ESSDDNNNEK VDHALCKIYL TPAAAKKKKA EEAENEKLKK EEDVEQLDLN QPDQLQLQQP 240 HDIVYQPQYC LLPEHHQPQP FPDNFSELIS FQQQPVMIPD DFEDFLAEFT KPHSLDGDEE 300 FNNYGLFEGF FDTEGMIKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-21 | 49 | 207 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 249463_s_at | 6e-84 | ||||
Expression Atlas | AT3G56530 | - | ||||
AtGenExpress | AT3G56530 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G56530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G56530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493654 | 0.0 | AB493654.1 Arabidopsis thaliana At3g56530 mRNA for hypothetical protein, partial cds, clone: RAAt3g56530. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191212.1 | 0.0 | NAC domain containing protein 64 | ||||
TrEMBL | A0A384KMI2 | 0.0 | A0A384KMI2_ARATH; NAC064 | ||||
TrEMBL | Q9LXY7 | 0.0 | Q9LXY7_ARATH; NAC domain containing protein 64 | ||||
STRING | AT3G56530.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Link Out ? help Back to Top | |
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Phytozome | AT3G56530.1 |
Entrez Gene | 824820 |
iHOP | AT3G56530 |
wikigenes | AT3G56530 |
Publications ? help Back to Top | |||
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