PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06292.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 380aa    MW: 45169.9 Da    PI: 10.0112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06292.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000346991223
                             EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                             +C+ Cgk F+    L++H +t H
  Rsa1.0_06292.1_g00001.1 69 RCGECGKGFRYEKCLRNHTQTmH 91
                             7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.6766896IPR007087Zinc finger, C2H2
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
PfamPF015012.2E-78108353IPR002495Glycosyl transferase, family 8
Gene3DG3DSA:3.90.550.105.1E-60161376IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534483.94E-50165377IPR029044Nucleotide-diphospho-sugar transferases
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEDHQEFEKP IFELHPRKAR SSRNKKKNHL VESRNHHHYE EIFCYYGLRE SPKRRTIQKS  60
LRIKKRLIRC GECGKGFRYE KCLRNHTQTM HSLEEKKKKK KKKKKKKSER DLLCIFRSDF  120
DWLTRENVPV LEAVETHHGI RNYYHGNHIA GANLSETTPR RFASKLQSRS PKYISLLNHL  180
RIYLPELFPN LDKVVFLDDD IVIQRDLSPL WDIDLHGKVN GAVETCRGED EWVMSKRLRN  240
YFNFSHPLIS KHLDPEECAW AYGMNIFDLR TWRKTDIRET YHSWLKANLK SNLTMWKLGT  300
LPPALIAFKG HVQAIDSSWH MLGLGYQSDT NIENAKKAAV IHYNGQSKPW LEIGFEHLRP  360
FWTKYVNYSN DFIKSCHILE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359RRTIQKS
297106KKKKKKKKKK
398106KKKKKKKKK
4100106KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in pectin and/or xylans biosynthesis in cell walls. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06292.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269670.0AK226967.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-35-O22.
GenBankBT0303210.0BT030321.1 Arabidopsis thaliana unknown protein (At3g01040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493428.10.0PREDICTED: probable galacturonosyltransferase 13 isoform X3
SwissprotQ0WV130.0GAUTD_ARATH; Probable galacturonosyltransferase 13
TrEMBLA0A3N6QTF10.0A0A3N6QTF1_BRACR; Hexosyltransferase
STRINGBra039149.1-P0.0(Brassica rapa)
STRINGBo5g156480.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.17e-13C2H2 family protein
Publications ? help Back to Top
  1. Sterling JD, et al.
    Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 5236-41
    [PMID:16540543]
  2. Persson S, et al.
    The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity.
    Plant Cell, 2007. 19(1): p. 237-55
    [PMID:17237350]
  3. Caffall KH,Pattathil S,Phillips SE,Hahn MG,Mohnen D
    Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testa.
    Mol Plant, 2009. 2(5): p. 1000-14
    [PMID:19825675]
  4. Westphal Y,Schols HA,Voragen AG,Gruppen H
    MALDI-TOF MS and CE-LIF Fingerprinting of plant cell wall polysaccharide digests as a screening tool for arabidopsis cell wall mutants.
    J. Agric. Food Chem., 2010. 58(8): p. 4644-52
    [PMID:20345181]
  5. Wang L, et al.
    Arabidopsis galacturonosyltransferase (GAUT) 13 and GAUT14 have redundant functions in pollen tube growth.
    Mol Plant, 2013. 6(4): p. 1131-48
    [PMID:23709340]