PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G15480.1
Common NameT20K14_90
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 402aa    MW: 46216.2 Da    PI: 6.9724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G15480.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-056487123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 ++C+ Cgk F+   ++k+H ++ H
  AT5G15480.1 64 FRCEECGKGFRYEKYFKNHRSMmH 87
                 89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0326487IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5936492IPR007087Zinc finger, C2H2
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
SuperFamilySSF576678.56E-5357384No hitNo description
PfamPF139122.2E-6358380IPR007087Zinc finger, C2H2
SMARTSM003550.45358380IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619358385IPR007087Zinc finger, C2H2
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEDEHQDLHK PINGALRDLK ITRSQKETEK STNQQQDVTC YYGLRENSKK KTQESPEPMK  60
KILFRCEECG KGFRYEKYFK NHRSMMHLSP NEKVCEESLM TLSRSLGFVK KKKRSRLGRS  120
GKTLFTTFLE PSSIFDATDE ELEVADCLIL LSKSAPKVVD ELKSLSEAVR VTPETPESSY  180
DLGCLLNKKP RKGGELESGV LSNEQRLMEE GFSSYGTSKE PASFLRDENR LDQQKRRKDG  240
EFESGLLSNE QRLLEEEITT PVTFKGPASS LRHKCALDRN GGEFGPEFLS NEQTLMEETW  300
KEPVSFLEDK HEFDQRKMRE AGDFESRFYR IELGVGAMEC TSSDTDMLTQ SDKKNVEHRC  360
RLCNKIFSSY QALGGHQTFH RMSKCKNKKN GIEESVEPRM TL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184176860.0
Genevisible246556_at0.0
Expression AtlasAT5G15480-
AtGenExpressAT5G15480-
ATTED-IIAT5G15480-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G15480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G15480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3911430.0AL391143.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566800.0DQ056680.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g15480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197052.10.0C2H2-type zinc finger family protein
TrEMBLQ9LF340.0Q9LF34_ARATH; C2H2-type zinc finger family protein
STRINGAT5G15480.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Stracke R, et al.
    Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.
    Plant J., 2007. 50(4): p. 660-77
    [PMID:17419845]