PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05995.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 409aa    MW: 44618.7 Da    PI: 7.6528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05995.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.4e-121236226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             +++ C+ff+rtG+C yG++C+F+H+
  Rsa1.0_05995.1_g00001.1 12 GERDCQFFLRTGQCGYGNSCRFNHP 36
                             6799********************9 PP
2zf-CCCH36.96.2e-125781327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +f++tG CkyG++Ck++H++
  Rsa1.0_05995.1_g00001.1 57 EPDCEYFLKTGACKYGSTCKYHHPK 81
                             789********************96 PP
3zf-CCCH29.31.5e-09102125326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++ C+++++ G C++G  CkF+H+
  Rsa1.0_05995.1_g00001.1 102 EKSCPYYMQKGVCRFGVACKFHHP 125
                              667********************8 PP
4zf-CCCH34.63.2e-11243266427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              ++Crff+ tGtCkyGd Ck+ H++
  Rsa1.0_05995.1_g00001.1 243 PECRFFMNTGTCKYGDDCKYFHPK 266
                              79********************96 PP
5zf-CCCH33.57.3e-11275299126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C +f + G+CkyG++CkFaH+
  Rsa1.0_05995.1_g00001.1 275 PGQPACGNFKA-GFCKYGANCKFAHP 299
                              57899******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-61037IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5961038IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-91236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-61439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-51636IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-65481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5685482IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-95781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-46080IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-698127IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-499126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.71399127IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4104124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544239267IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6240266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7241268IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9243266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6245266IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61274301IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8276299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5280298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTVNEPYPDR SGERDCQFFL RTGQCGYGNS CRFNHPLSHL PQGVLYHRDE LPERIGEPDC  60
EYFLKTGACK YGSTCKYHHP KDRNGAGPVL FNVLGYPMRQ GEKSCPYYMQ KGVCRFGVAC  120
KFHHPHPNPQ PHNGHSSPYG MSSFPSVGFP YGGGLTMMSL PPATYGVMPP PPPPPANYGA  180
MPRPQVPHPQ AYMPFMVAPP QGWSTYMAGT NPIYNVKTQP DSSSSASVPV GVTSHQSSLS  240
ESPECRFFMN TGTCKYGDDC KYFHPKERML ISARPGQPAC GNFKAGFCKY GANCKFAHPL  300
PLNPYDGTSL TMPTAYASPV TTHHLPSRSD STALSNGNKP STETEKQDER SDKSEVQEPS  360
QLNISDATAL SNGKSDAESP SSETKKNESS DNASQLDKSG KQDSSDNAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05995.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433239.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-179C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CMV50.0M4CMV5_BRARP; Uncharacterized protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-160zinc finger nuclease 2